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1

Metagenomics-Guided Discovery of Potential Bacterial Metallothionein Genes from the Soil Microbiome That Confer Cu and/or Cd Resistance

Li, Xiaofang, Islam, M. Mominul, Chen, Liang, Wang, Likun, Zheng, Xin, Kivisaar, Maia

Journal:

Applied and Environmental Microbiology

Year:

2020

File:

PDF, 2.12 MB

2020

2

Differential DNA bending introduced by the Pseudomonas putida LysR-type regulator, CatR, at the plasmid-borne pheBA and chromosomal catBC promoters

M. R. Parsek, M. Kivisaar, A. M. Chakrabarty

Journal:

Molecular Microbiology

Year:

1995

Language:

english

File:

PDF, 2.30 MB

english, 1995

3

Use of mCherry Red Fluorescent Protein for Studies of Protein Localization and Gene Expression in Clostridium difficile

Ransom, Eric M., Ellermeier, Craig D., Weiss, David S., Kivisaar, M.

Journal:

Applied and Environmental Microbiology

Year:

2015

Language:

english

File:

PDF, 2.01 MB

english, 2015

4

Lysobacter PilR, the Regulator of Type IV Pilus Synthesis, Controls Antifungal Antibiotic Production via a Cyclic di-GMP Pathway

Chen, Yuan, Xia, Jing, Su, Zhenhe, Xu, Gaoge, Gomelsky, Mark, Qian, Guoliang, Liu, Fengquan, Kivisaar, Maia

Journal:

Applied and Environmental Microbiology

Year:

2017

Language:

english

File:

PDF, 4.91 MB

english, 2017

5

Stationary phase mutagenesis: mechanisms that accelerate adaptation of microbial populations under environmental stress

Journal:

Environmental Microbiology

Year:

2003

Language:

english

File:

PDF, 202 KB

english, 2003

6

Identification of ColR binding consensus and prediction of regulon of ColRS two-component system

Paula A Kivistik, Rait Kivi, Maia Kivisaar, Rita Hõrak

Journal:

BMC Molecular Biology

Year:

2009

Language:

english

File:

PDF, 3.45 MB

english, 2009

7

IHF is the limiting host factor in transposition of Pseudomonas putida transposon Tn4652 in stationary phase

Heili Ilves, Rita Hõrak, Riho Teras, Maia Kivisaar

Journal:

Molecular Microbiology

Year:

2004

Language:

english

File:

PDF, 220 KB

english, 2004

8

The ColR–ColS two-component signal transduction system is involved in regulation of Tn4652 transposition in Pseudomonas putida under starvation conditions

Rita Hõrak, Heili Ilves, Priit Pruunsild, Martin Kuljus, Maia Kivisaar

Journal:

Molecular Microbiology

Year:

2004

Language:

english

File:

PDF, 510 KB

english, 2004

9

Degradation of nitroaromatic compounds: a model to study evolution of metabolic pathways

Journal:

Molecular Microbiology

Year:

2009

Language:

english

File:

PDF, 176 KB

english, 2009

10

Evolution of catabolic pathways and their regulatory systems in synthetic nitroaromatic compounds degrading bacteria

Journal:

Molecular Microbiology

Year:

2011

Language:

english

File:

PDF, 246 KB

english, 2011

11

ColRS two-component system prevents lysis of subpopulation of glucose-grown Pseudomonas putida

Marta Putrinš, Heili Ilves, Maia Kivisaar, Rita Hõrak

Journal:

Environmental Microbiology

Year:

2008

Language:

english

File:

PDF, 292 KB

english, 2008

12

Mechanisms of stationary-phase mutagenesis in bacteria: mutational processes in pseudomonads

Journal:

FEMS Microbiology Letters

Year:

2010

Language:

english

File:

PDF, 162 KB

english, 2010

13

Dual role of NER in mutagenesis in Pseudomonas putida

Mariliis Tark, Andres Tover, Lauri Koorits, Radi Tegova, Maia Kivisaar

Journal:

Year:

2008

Language:

english

File:

PDF, 663 KB

english, 2008

14

Molecular characterization of Rifr mutations in Pseudomonas aeruginosa and Pseudomonas putida

Tatjana Jatsenko, Andres Tover, Radi Tegova, Maia Kivisaar

Journal:

Mutation Research/Fundamental and Molecular Mechanisms of Mutagenesis

Year:

2010

Language:

english

File:

PDF, 917 KB

english, 2010

15

Involvement of specialized DNA polymerases Pol II, Pol IV and DnaE2 in DNA replication in the absence of Pol I in Pseudomonas putida

Julia Sidorenko, Tatjana Jatsenko, Signe Saumaa, Riho Teras, Mariliis Tark-Dame, Rita Hõrak, Maia Kivisaar

Journal:

Mutation Research/Fundamental and Molecular Mechanisms of Mutagenesis

Year:

2011

Language:

english

File:

PDF, 1.11 MB

english, 2011

16

The impact of ColRS two-component system and TtgABC efflux pump on phenol tolerance ofPseudomonas putidabecomes evident only in growing bacteria

Marta Putrinš, Heili Ilves, Liisa Lilje, Maia Kivisaar, Rita Hõrak

Journal:

BMC Microbiology

Year:

2010

Language:

english

File:

PDF, 1.01 MB

english, 2010

17

Involvement of DNA mismatch repair in stationary-phase mutagenesis during prolonged starvation of Pseudomonas putida

Signe Saumaa, Kairi Tarassova, Mariliis Tark, Andres Tover, Radi Tegova, Maia Kivisaar

Journal:

Year:

2006

Language:

english

File:

PDF, 462 KB

english, 2006

18

Study of involvement of ImuB and DnaE2 in stationary-phase mutagenesis in Pseudomonas putida

Lauri Koorits, Radi Tegova, Mariliis Tark, Kairi Tarassova, Andres Tover, Maia Kivisaar

Journal:

Year:

2007

Language:

english

File:

PDF, 397 KB

english, 2007

19

Homologous recombination is facilitated in starving populations of Pseudomonas putida by phenol stress and affected by chromosomal location of the recombination target

Kairi Tavita, Katren Mikkel, Mariliis Tark-Dame, Hansjoerg Jerabek, Riho Teras, Julia Sidorenko, Radi Tegova, Andres Tover, Remus T. Dame, Maia Kivisaar

Journal:

Mutation Research/Fundamental and Molecular Mechanisms of Mutagenesis

Year:

2012

Language:

english

File:

PDF, 1.31 MB

english, 2012

20

Selection of independent plasmids determining phenol degradation inPseudomonas putida and the cloning and expression of genes encoding phenol monooxygenase and catechol 1,2-dioxygenase

Maia Kivisaar, Rita Ho˜rak, Lagle Kasak, Ain Heinaru, Jaan Habicht

Journal:

Year:

1990

Language:

english

File:

PDF, 1.38 MB

english, 1990

21

Sequence of the plasmid-encoded catechol 1,2-dioxygenase-expressing gene, pheB, of phenol-degrading Pseudomonas sp. strain EST1001

Kivisaar, Maia, Kasak, Lagle, Nurk, Allan

Journal:

Year:

1991

Language:

english

File:

PDF, 719 KB

english, 1991

22

In-vivo-generated fusion promoters in Pseudomonas putida

Nurk, Allan, Tamm, Anu, Hôrak, Rita, Kivisaar, Maia

Journal:

Year:

1993

Language:

english

File:

PDF, 973 KB

english, 1993

23

Sequence of the gene (pheA) encoding phenol monooxygenase from Pseudomonas sp. EST1001: expression in Escherichia coli and Pseudomonas putida

Nurk, Allan, Kasak, Lagle, Kivisaar, Maia

Journal:

Year:

1991

Language:

english

File:

PDF, 713 KB

english, 1991

24

Promoter-Creating Mutations in Pseudomonas putida: A Model System for the Study of Mutation in Starving Bacteria

Lagle Kasak, Rita Horak and Maia Kivisaar

Journal:

Proceedings of the National Academy of Sciences

Year:

1997

Language:

english

File:

PDF, 1.08 MB

english, 1997

25

Fis regulates the competitiveness of Pseudomonas putida on barley roots by inducing biofilm formation

Jakovleva, J., Teppo, A., Velts, A., Saumaa, S., Moor, H., Kivisaar, M., Teras, R.

Journal:

Microbiology (Society for General Microbiology)

Year:

2012

Language:

english

File:

PDF, 354 KB

english, 2012

26

Fis overexpression enhances Pseudomonas putida biofilm formation by regulating the ratio of LapA and LapF

Moor, H., Teppo, A., Lahesaare, A., Kivisaar, M., Teras, R.

Journal:

Microbiology (Society for General Microbiology)

Year:

2014

Language:

english

File:

PDF, 884 KB

english, 2014

27

Acute Rejection Diagnosed with Computed Tomography in a Porcine Experimental Lung Transplantation Model

Ikonen, Tuija, Kivisaar, Leena, Taskinen, Eero, Uusitalo, Matti, Aarnio, Pertti, Harjuia, Ari L. J.

Journal:

Scandinavian Cardiovascular Journal

Year:

1997

Language:

english

File:

PDF, 958 KB

english, 1997

28

NER enzymes maintain genome integrity and suppress homologous recombination in the absence of exogenously induced DNA damage in Pseudomonas putida

Sidorenko, Julia, Ukkivi, Kärt, Kivisaar, Maia

Journal:

Year:

2015

Language:

english

File:

PDF, 1.18 MB

english, 2015

29

Genome-Wide Identification of Genes Necessary for Biofilm Formation by Nosocomial Pathogen Stenotrophomonas maltophilia Reveals that Orphan Response Regulator FsnR Is a Critical Modulator

Kang, Xiu-Min, Wang, Fang-Fang, Zhang, Huan, Zhang, Qi, Qian, Wei, Kivisaar, M.

Journal:

Applied and Environmental Microbiology

Year:

2015

Language:

english

File:

PDF, 3.61 MB

english, 2015

30

A Vector System for ABC Transporter-Mediated Secretion and Purification of Recombinant Proteins in Pseudomonas Species

Ryu, Jaewook, Lee, Ukjin, Park, Jiye, Yoo, Do-Hyun, Ahn, Jung Hoon, Kivisaar, M.

Journal:

Applied and Environmental Microbiology

Year:

2015

Language:

english

File:

PDF, 4.17 MB

english, 2015

31

Functional Expression of Full-Length TrkA in the Prokaryotic Host Magnetospirillum magneticum AMB-1 by Using a Magnetosome Display System

Honda, Toru, Yasuda, Takayuki, Tanaka, Tsuyoshi, Hagiwara, Koji, Arai, Tohru, Yoshino, Tomoko, Kivisaar, M.

Journal:

Applied and Environmental Microbiology

Year:

2015

Language:

english

File:

PDF, 1.23 MB

english, 2015

32

Thermal and Solvent Stress Cross-Tolerance Conferred to Corynebacterium glutamicum by Adaptive Laboratory Evolution

Oide, Shinichi, Gunji, Wataru, Moteki, Yasuhiro, Yamamoto, Shogo, Suda, Masako, Jojima, Toru, Yukawa, Hideaki, Inui, Masayuki, Kivisaar, M.

Journal:

Applied and Environmental Microbiology

Year:

2015

Language:

english

File:

PDF, 2.63 MB

english, 2015

33

Freeing P seudomonas putida KT2440 of its proviral load strengthens endurance to environmental stresses

Martínez-García, Esteban, Jatsenko, Tatjana, Kivisaar, Maia, de Lorenzo, Víctor

Journal:

Environmental Microbiology

Year:

2015

Language:

english

File:

PDF, 833 KB

english, 2015

34

Enhancing the Secretion Efficiency and Thermostability of a Bacillus deramificans Pullulanase Mutant (D437H/D503Y) by N-Terminal Domain Truncation

Duan, Xuguo, Wu, Jing, Kivisaar, M.

Journal:

Applied and Environmental Microbiology

Year:

2015

Language:

english

File:

PDF, 845 KB

english, 2015

35

Genomic Potential for Polysaccharide Deconstruction in Bacteria

Berlemont, Renaud, Martiny, Adam C., Kivisaar, M.

Journal:

Applied and Environmental Microbiology

Year:

2015

Language:

english

File:

PDF, 1.15 MB

english, 2015

36

A Patatin-Like Protein Associated with the Polyhydroxyalkanoate (PHA) Granules of Haloferax mediterranei Acts as an Efficient Depolymerase in the Degradation of Native PHA

Liu, Guiming, Hou, Jing, Cai, Shuangfeng, Zhao, Dahe, Cai, Lei, Han, Jing, Zhou, Jian, Xiang, Hua, Kivisaar, M.

Journal:

Applied and Environmental Microbiology

Year:

2015

Language:

english

File:

PDF, 3.94 MB

english, 2015

37

The ColRS Two-Component System Regulates Membrane Functions and Protects Pseudomonas putida against Phenol

Kivistik, P. A., Putrins, M., Puvi, K., Ilves, H., Kivisaar, M., Horak, R.

Journal:

Journal of Bacteriology

Year:

2006

Language:

english

File:

PDF, 608 KB

english, 2006

38

Site-Directed Mutagenesis of HgcA and HgcB Reveals Amino Acid Residues Important for Mercury Methylation

Smith, Steven D., Bridou, Romain, Johs, Alexander, Parks, Jerry M., Elias, Dwayne A., Hurt, Richard A., Brown, Steven D., Podar, Mircea, Wall, Judy D., Kivisaar, M.

Journal:

Applied and Environmental Microbiology

Year:

2015

Language:

english

File:

PDF, 5.30 MB

english, 2015

39

A DNA Polymerase V Homologue Encoded by TOL Plasmid pWW0 Confers Evolutionary Fitness on Pseudomonas putida under Conditions of Environmental Stress

Tark, M., Tover, A., Tarassova, K., Tegova, R., Kivi, G., Horak, R., Kivisaar, M.

Journal:

Journal of Bacteriology

Year:

2005

Language:

english

File:

PDF, 179 KB

english, 2005

40

Sialic Acid-Mediated Gene Expression in Streptococcus pneumoniae and Role of NanR as a Transcriptional Activator of the nan Gene Cluster

Afzal, Muhammad, Shafeeq, Sulman, Ahmed, Hifza, Kuipers, Oscar P., Kivisaar, M.

Journal:

Applied and Environmental Microbiology

Year:

2015

Language:

english

File:

PDF, 886 KB

english, 2015

41

Different Spectra of Stationary-Phase Mutations in Early-Arising versus Late-Arising Mutants of Pseudomonas putida: Involvement of the DNA Repair Enzyme MutY and the Stationary-Phase Sigma Factor RpoS

Saumaa, S., Tover, A., Kasak, L., Kivisaar, M.

Journal:

Journal of Bacteriology

Year:

2002

Language:

english

File:

PDF, 121 KB

english, 2002

42

Effects of Combination of Different -10 Hexamers and Downstream Sequences on Stationary-Phase-Specific Sigma Factor sigma S-Dependent Transcription in Pseudomonas putida

Ojangu, E.-L., Tover, A., Teras, R., Kivisaar, M.

Journal:

Journal of Bacteriology

Year:

2000

Language:

english

File:

PDF, 387 KB

english, 2000

43

Heterologous Production of Hyaluronic Acid in an ε-Poly-l-Lysine Producer, Streptomyces albulus

Yoshimura, Tomohiro, Shibata, Nobuyuki, Hamano, Yoshimitsu, Yamanaka, Kazuya, Kivisaar, M.

Journal:

Applied and Environmental Microbiology

Year:

2015

Language:

english

File:

PDF, 2.28 MB

english, 2015

44

Transcription from Fusion Promoters Generated during Transposition of Transposon Tn4652 Is Positively Affected by Integration Host Factor in Pseudomonas putida

Teras, R., Horak, R., Kivisaar, M.

Journal:

Journal of Bacteriology

Year:

2000

Language:

english

File:

PDF, 1.13 MB

english, 2000

45

Two-Component-System Histidine Kinases Involved in Growth of Listeria monocytogenes EGD-e at Low Temperatures

Pöntinen, Anna, Markkula, Annukka, Lindström, Miia, Korkeala, Hannu, Kivisaar, M.

Journal:

Applied and Environmental Microbiology

Year:

2015

Language:

english

File:

PDF, 1.09 MB

english, 2015

46

Novel Functions of (p)ppGpp and Cyclic di-GMP in Mycobacterial Physiology Revealed by Phenotype Microarray Analysis of Wild-Type and Isogenic Strains of Mycobacterium smegmatis

Gupta, Kuldeepkumar Ramnaresh, Kasetty, Sanjay, Chatterji, Dipankar, Kivisaar, M.

Journal:

Applied and Environmental Microbiology

Year:

2015

Language:

english

File:

PDF, 8.70 MB

english, 2015

47

Simultaneous Degradation of Atrazine and Phenol by Pseudomonas sp. Strain ADP: Effects of Toxicity and Adaptation

Neumann, G., Teras, R., Monson, L., Kivisaar, M., Schauer, F., Heipieper, H. J.

Journal:

Applied and Environmental Microbiology

Year:

2004

Language:

english

File:

PDF, 195 KB

english, 2004

48

Involvement of S in Starvation-Induced Transposition of Pseudomonas putida Transposon Tn4652

Ilves, H., Horak, R., Kivisaar, M.

Journal:

Journal of Bacteriology

Year:

2001

Language:

english

File:

PDF, 287 KB

english, 2001

49

Phosphoryl Transfer from α-d-Glucose 1-Phosphate Catalyzed by Escherichia coli Sugar-Phosphate Phosphatases of Two Protein Superfamily Types

Wildberger, Patricia, Pfeiffer, Martin, Brecker, Lothar, Rechberger, Gerald N., Birner-Gruenberger, Ruth, Nidetzky, Bernd, Kivisaar, M.

Journal:

Applied and Environmental Microbiology

Year:

2015

Language:

english

File:

PDF, 2.17 MB

english, 2015

50

Enterocin F4-9, a Novel O -Linked Glycosylated Bacteriocin

Maky, Mohamed Abdelfattah, Ishibashi, Naoki, Zendo, Takeshi, Perez, Rodney Honrada, Doud, Jehan Ragab, Karmi, Mohamed, Sonomoto, Kenji, Kivisaar, M.

Journal:

Applied and Environmental Microbiology

Year:

2015

Language:

english

File:

PDF, 867 KB

english, 2015